IL_9SYR_186

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

9SYR|1|S1|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_186 not in the Motif Atlas

Homologous match to IL_9PN5_166

Geometric discrepancy: 0.1002

The information below is about IL_9PN5_166

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9SYR|1|S1|U|495
9SYR|1|S1|C|496
*
9SYR|1|S1|G|506
9SYR|1|S1|G|507
9SYR|1|S1|A|508

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S9

Chain Sh

Isoform 3 of Small ribosomal subunit protein eS24

Chain Sw

Small ribosomal subunit protein eS4, X isoform