IL_9SYR_195

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

9SYR|1|S1|A2M|668

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_195 not in the Motif Atlas

Homologous match to IL_9H3G_189

Geometric discrepancy: 0.1011

The information below is about IL_9H3G_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9SYR|1|S1|G|665
9SYR|1|S1|U|666
9SYR|1|S1|U|667
9SYR|1|S1|A2M|668
9SYR|1|S1|A|669
9SYR|1|S1|A|670
9SYR|1|S1|A|671
*
9SYR|1|S1|U|1161
9SYR|1|S1|C|1162

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sg

Small ribosomal subunit protein uS12

Chain Sj

40S ribosomal protein S26