IL_9SYR_201

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UCU*AA

Length

5 nucleotides

Bulged bases

9SYR|1|S1|C|748

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_201 not in the Motif Atlas

Geometric match to IL_3SN2_001

Geometric discrepancy: 0.2018

The information below is about IL_3SN2_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9SYR|1|S1|U|747
9SYR|1|S1|C|748
9SYR|1|S1|U|749
*
9SYR|1|S1|A|794
9SYR|1|S1|A|795

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sw

Small ribosomal subunit protein eS4, X isoform