IL_9SYR_218

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_218 not in the Motif Atlas

Geometric match to IL_8GLP_245

Geometric discrepancy: 0.1084

The information below is about IL_8GLP_245

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9SYR|1|S1|U|1101
9SYR|1|S1|G|1102
9SYR|1|S1|C|1103
*
9SYR|1|S1|G|1129
9SYR|1|S1|G|1130
9SYR|1|S1|G|1131

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S17

Chain Sj

40S ribosomal protein S26

Chain Sk

40S ribosomal protein S27

Chain Su

40S ribosomal protein S3a