IL_9SYR_223

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

9SYR|1|S1|C|1215, 9SYR|1|S1|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|C|1213
9SYR|1|S1|A|1214
9SYR|1|S1|C|1215
9SYR|1|S1|C|1216
9SYR|1|S1|A|1217
*
9SYR|1|S1|U|1681
9SYR|1|S1|C|1682
9SYR|1|S1|C|1683
9SYR|1|S1|C|1684
9SYR|1|S1|U|1685
9SYR|1|S1|G|1686

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S2

mRNA

Chain S3

Transfer RNA; tRNA

Chain SC

40S ribosomal protein S5

Chain Sc

40S ribosomal protein S16

Chain Sj

40S ribosomal protein S26

Chain So

40S ribosomal protein S28