IL_9SYR_241

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9SYR|1|S1|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_241 not in the Motif Atlas

Geometric match to IL_8GLP_055

Geometric discrepancy: 0.2172

The information below is about IL_8GLP_055

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9SYR|1|S1|C|1416
9SYR|1|S1|C|1417
*
9SYR|1|S1|G|1422
9SYR|1|S1|C|1423
9SYR|1|S1|G|1424

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S16

Chain Si

Small ribosomal subunit protein eS19