IL_9SYR_242

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_242 not in the Motif Atlas

Geometric match to IL_8GLP_270

Geometric discrepancy: 0.1523

The information below is about IL_8GLP_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9SYR|1|S1|A|1537
9SYR|1|S1|C|1538
9SYR|1|S1|U|1539
*
9SYR|1|S1|A|1594
9SYR|1|S1|U|1595
9SYR|1|S1|U|1596

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S5

Chain Sc

40S ribosomal protein S16

Chain Sd

Small ribosomal subunit protein uS13

Chain Si

Small ribosomal subunit protein eS19

Chain Sm

40S ribosomal protein S25