IL_9SYR_248

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_248 not in the Motif Atlas

Homologous match to IL_9H3G_234

Geometric discrepancy: 0.091

The information below is about IL_9H3G_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.5

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9SYR|1|S1|G|1702
9SYR|1|S1|OMC|1703
9SYR|1|S1|C|1704
9SYR|1|S1|C|1705
*
9SYR|1|S1|G|1829
9SYR|1|S1|U|1830
9SYR|1|S1|A|1831
9SYR|1|S1|6MZ|1832
9SYR|1|S1|C|1833

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain S2

mRNA

Chain S3

Transfer RNA; tRNA

Chain Sq

60S ribosomal protein L41