IL_9SYR_253

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

9SYR|1|S1|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_253 not in the Motif Atlas

Homologous match to IL_9H3G_239

Geometric discrepancy: 0.5273

The information below is about IL_9H3G_239

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9SYR|1|S1|U|1720
9SYR|1|S1|U|1721
9SYR|1|S1|G|1722
*
9SYR|1|S1|U|1812
9SYR|1|S1|A|1813

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Lm

60S ribosomal protein L23

Chain Sg

Small ribosomal subunit protein uS12

Chain Sq

60S ribosomal protein L41