IL_9SYR_257

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_257 not in the Motif Atlas

Homologous match to IL_9H3G_243

Geometric discrepancy: 0.0943

The information below is about IL_9H3G_243

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9SYR|1|S1|C|1742
9SYR|1|S1|G|1743
9SYR|1|S1|G|1744
9SYR|1|S1|A|1745
9SYR|1|S1|U|1746
*
9SYR|1|S1|A|1788
9SYR|1|S1|G|1789
9SYR|1|S1|A|1790
9SYR|1|S1|A|1791
9SYR|1|S1|G|1792

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L24

Chain SA

40S ribosomal protein S8

Chain Sy

40S ribosomal protein S6