IL_9T0Y_150

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T0Y_150 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3136

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9T0Y|1|a|G|2124
9T0Y|1|a|G|2125
9T0Y|1|a|A|2126
9T0Y|1|a|G|2127
*
9T0Y|1|a|C|2161
9T0Y|1|a|G|2162
9T0Y|1|a|A|2163
9T0Y|1|a|C|2164
9T0Y|1|a|C|2165
9T0Y|1|a|U|2166
9T0Y|1|a|U|2167
9T0Y|1|a|G|2168
9T0Y|1|a|A|2169
9T0Y|1|a|A|2170
9T0Y|1|a|A|2171
9T0Y|1|a|U|2172
9T0Y|1|a|A|2173
9T0Y|1|a|C|2174

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA