IL_9T1B_003

3D structure

PDB id

9T1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-RlmE strain, PTC class 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9T1B|1|a|G|801, 9T1B|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T1B_003 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1204

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9T1B|1|a|G|674
9T1B|1|a|A|675
9T1B|1|a|A|676
9T1B|1|a|A|677
9T1B|1|a|C|678
*
9T1B|1|a|G|799
9T1B|1|a|A|800
9T1B|1|a|G|801
9T1B|1|a|A|802
9T1B|1|a|U|803
9T1B|1|a|A|804
9T1B|1|a|G|805
9T1B|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15