IL_9T1C_005

3D structure

PDB id

9T1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-RlmE strain, PTC class 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9T1C|1|a|G|776, 9T1C|1|a|A|788, 9T1C|1|a|A|789, 9T1C|1|a|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T1C_005 not in the Motif Atlas

Geometric match to IL_9E6Q_032

Geometric discrepancy: 0.0453

The information below is about IL_9E6Q_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9T1C|1|a|G|775
9T1C|1|a|G|776
9T1C|1|a|G|777
*
9T1C|1|a|C|787
9T1C|1|a|A|788
9T1C|1|a|A|789
9T1C|1|a|U|790
9T1C|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain r

Large ribosomal subunit protein uL22