IL_9T4R_017

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

9T4R|1|A|U|420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_017 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.1268

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9T4R|1|A|U|417
9T4R|1|A|G|418
9T4R|1|A|A|419
9T4R|1|A|U|420
9T4R|1|A|G|421
9T4R|1|A|A|422
9T4R|1|A|A|423
9T4R|1|A|G|424
*
9T4R|1|A|C|435
9T4R|1|A|G|436
9T4R|1|A|U|437
9T4R|1|A|A|438
9T4R|1|A|A|439
9T4R|1|A|A|440
9T4R|1|A|A|441

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4