IL_9T4R_043

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9T4R|1|A|C|1065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_043 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.1612

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9T4R|1|A|U|1063
9T4R|1|A|G|1064
9T4R|1|A|C|1065
9T4R|1|A|A|1066
9T4R|1|A|U|1067
*
9T4R|1|A|A|1214
9T4R|1|A|U|1215
9T4R|1|A|G|1216

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain N

Small ribosomal subunit protein uS14B

Chain j

Small ribosomal subunit protein uS10