IL_9T4R_060

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_060 not in the Motif Atlas

Geometric match to IL_8B0X_103

Geometric discrepancy: 0.1726

The information below is about IL_8B0X_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9T4R|1|A|U|1434
9T4R|1|A|A|1435
9T4R|1|A|A|1436
9T4R|1|A|C|1437
*
9T4R|1|A|G|1484
9T4R|1|A|G|1485
9T4R|1|A|G|1486
9T4R|1|A|A|1487

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain U

Large ribosomal subunit protein uL14

Chain a

Large subunit ribosomal RNA; LSU rRNA