IL_9T4R_105

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

9T4R|1|a|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_105 not in the Motif Atlas

Homologous match to IL_7A0S_035

Geometric discrepancy: 0.2701

The information below is about IL_7A0S_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9T4R|1|a|A|1055
9T4R|1|a|U|1056
9T4R|1|a|A|1057
*
9T4R|1|a|U|1193
9T4R|1|a|U|1194

Current chains

Chain a

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain p

Large ribosomal subunit protein bL20