IL_9T4R_118

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_118 not in the Motif Atlas

Geometric match to IL_9DFE_049

Geometric discrepancy: 0.112

The information below is about IL_9DFE_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9T4R|1|a|G|1347
9T4R|1|a|U|1348
9T4R|1|a|U|1349
9T4R|1|a|U|1350
*
9T4R|1|a|A|1645
9T4R|1|a|C|1646

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23