IL_9T4R_129

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG*CGUUAAG

Length

9 nucleotides

Bulged bases

9T4R|1|a|U|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_129 not in the Motif Atlas

Geometric match to IL_9DFE_060

Geometric discrepancy: 0.296

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

9T4R|1|a|U|1525
9T4R|1|a|G|1526
*
9T4R|1|a|C|1549
9T4R|1|a|G|1550
9T4R|1|a|U|1551
9T4R|1|a|U|1552
9T4R|1|a|A|1553
9T4R|1|a|A|1554
9T4R|1|a|G|1555

Current chains

Chain a

23S rRNA

Nearby chains