IL_9T4R_130

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9T4R|1|a|A|1533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_130 not in the Motif Atlas

Geometric match to IL_8B0X_121

Geometric discrepancy: 0.2842

The information below is about IL_8B0X_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9T4R|1|a|U|1532
9T4R|1|a|A|1533
9T4R|1|a|G|1534
*
9T4R|1|a|C|1542
9T4R|1|a|G|1543

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2