IL_9T4R_134
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T4R_134 not in the Motif Atlas
- Geometric match to IL_8B0X_180
- Geometric discrepancy: 0.0339
- The information below is about IL_8B0X_180
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.2
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9T4R|1|a|G|1708
9T4R|1|a|G|1709
9T4R|1|a|A|1710
9T4R|1|a|A|1711
9T4R|1|a|C|1712
9T4R|1|a|U|1713
9T4R|1|a|C|1714
9T4R|1|a|G|1715
9T4R|1|a|G|1716
*
9T4R|1|a|C|2015
9T4R|1|a|U|2016
9T4R|1|a|G|2017
9T4R|1|a|U|2018
9T4R|1|a|C|2019
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain U
- Large ribosomal subunit protein uL14
- Chain d
- Large ribosomal subunit protein uL3
Coloring options: