IL_9T4R_135

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

9T4R|1|a|G|2017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_135 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1064

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9T4R|1|a|A|1711
9T4R|1|a|C|1712
9T4R|1|a|U|1713
9T4R|1|a|C|1714
9T4R|1|a|G|1715
9T4R|1|a|G|1716
*
9T4R|1|a|C|2015
9T4R|1|a|U|2016
9T4R|1|a|G|2017
9T4R|1|a|U|2018

Current chains

Chain a

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL14

Chain d

Large ribosomal subunit protein uL3