IL_9T4R_145

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_145 not in the Motif Atlas

Geometric match to IL_8B0X_136

Geometric discrepancy: 0.0663

The information below is about IL_8B0X_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9T4R|1|a|U|1889
9T4R|1|a|U|1890
9T4R|1|a|A|1891
9T4R|1|a|G|1892
*
9T4R|1|a|C|1899
9T4R|1|a|G|1900
9T4R|1|a|A|1901
9T4R|1|a|A|1902
9T4R|1|a|G|1903

Current chains

Chain a

23S rRNA

Nearby chains