IL_9T4R_147
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 9T4R|1|a|A|1963, 9T4R|1|a|U|1969, 9T4R|1|a|C|1988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T4R_147 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.1741
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
9T4R|1|a|C|1959
9T4R|1|a|G|1960
9T4R|1|a|A|1961
9T4R|1|a|A|1962
9T4R|1|a|A|1963
9T4R|1|a|U|1964
9T4R|1|a|U|1965
9T4R|1|a|C|1966
9T4R|1|a|C|1967
9T4R|1|a|U|1968
9T4R|1|a|U|1969
9T4R|1|a|G|1970
*
9T4R|1|a|C|1986
9T4R|1|a|C|1987
9T4R|1|a|C|1988
9T4R|1|a|G|1989
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: