IL_9T4R_149

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9T4R|1|a|C|2080, 9T4R|1|a|U|2638, 9T4R|1|a|A|2639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_149 not in the Motif Atlas

Geometric match to IL_8B0X_140

Geometric discrepancy: 0.061

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

9T4R|1|a|A|2079
9T4R|1|a|C|2080
9T4R|1|a|G|2081
*
9T4R|1|a|C|2637
9T4R|1|a|U|2638
9T4R|1|a|A|2639
9T4R|1|a|U|2640

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32