IL_9T4R_164

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

9T4R|1|a|U|2516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_164 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1116

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9T4R|1|a|A|2484
9T4R|1|a|U|2485
9T4R|1|a|C|2486
*
9T4R|1|a|G|2514
9T4R|1|a|G|2515
9T4R|1|a|U|2516
9T4R|1|a|U|2517
9T4R|1|a|U|2518

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16