IL_9T4R_167

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9T4R|1|a|G|2601, 9T4R|1|a|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_167 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1018

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9T4R|1|a|C|2535
9T4R|1|a|U|2536
9T4R|1|a|C|2537
*
9T4R|1|a|G|2599
9T4R|1|a|C|2600
9T4R|1|a|G|2601
9T4R|1|a|A|2602
9T4R|1|a|G|2603

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain z

Large ribosomal subunit protein bL32