IL_9T4R_170

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9T4R|1|a|A|2627

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_170 not in the Motif Atlas

Geometric match to IL_8GLP_154

Geometric discrepancy: 0.1561

The information below is about IL_8GLP_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9T4R|1|a|C|2616
9T4R|1|a|G|2617
*
9T4R|1|a|C|2626
9T4R|1|a|A|2627
9T4R|1|a|G|2628

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2