IL_9T4R_175

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UU*AUAG

Length

6 nucleotides

Bulged bases

9T4R|1|a|U|2737, 9T4R|1|a|A|2738

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_175 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.2168

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

9T4R|1|a|U|2720
9T4R|1|a|U|2721
*
9T4R|1|a|A|2736
9T4R|1|a|U|2737
9T4R|1|a|A|2738
9T4R|1|a|G|2739

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19