IL_9T4R_179
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGGAAG*UGGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T4R_179 not in the Motif Atlas
- Homologous match to IL_7A0S_101
- Geometric discrepancy: 0.3036
- The information below is about IL_7A0S_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.2
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
9T4R|1|a|U|2865
9T4R|1|a|G|2866
9T4R|1|a|G|2867
9T4R|1|a|A|2868
9T4R|1|a|A|2869
9T4R|1|a|G|2870
*
9T4R|1|a|U|2883
9T4R|1|a|G|2884
9T4R|1|a|G|2885
9T4R|1|a|A|2886
9T4R|1|a|G|2887
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: