IL_9T5X_027

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T5X_027 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3464

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9T5X|1|A|G|597
9T5X|1|A|U|598
9T5X|1|A|C|599
*
9T5X|1|A|G|639
9T5X|1|A|A|640
9T5X|1|A|U|641
9T5X|1|A|A|642
9T5X|1|A|C|643

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain Q

Small ribosomal subunit protein uS17