IL_9T61_020

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.0972

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9T61|1|A|U|406
9T61|1|A|G|407
9T61|1|A|A|408
9T61|1|A|A|409
9T61|1|A|G|410
9T61|1|A|A|411
9T61|1|A|A|412
9T61|1|A|G|413
*
9T61|1|A|U|424
9T61|1|A|G|425
9T61|1|A|U|426
9T61|1|A|A|427
9T61|1|A|A|428
9T61|1|A|A|429
9T61|1|A|G|430

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4