IL_9T61_031

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_031 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.0755

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9T61|1|A|G|598
9T61|1|A|A|599
9T61|1|A|U|600
*
9T61|1|A|A|632
9T61|1|A|C|633
9T61|1|A|C|634

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain Q

Small ribosomal subunit protein uS17