IL_9T61_043

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GCA*UUCUC

Length

8 nucleotides

Bulged bases

9T61|1|A|C|930

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_043 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.276

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9T61|1|A|G|929
9T61|1|A|C|930
9T61|1|A|A|931
*
9T61|1|A|U|1377
9T61|1|A|U|1378
9T61|1|A|C|1379
9T61|1|A|U|1380
9T61|1|A|C|1381

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain Y

Transfer RNA; tRNA