IL_9T61_050

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9T61|1|A|C|1197, 9T61|1|A|A|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_050 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.178

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9T61|1|A|G|1053
9T61|1|A|G|1054
*
9T61|1|A|U|1196
9T61|1|A|C|1197
9T61|1|A|A|1198
9T61|1|A|U|1199
9T61|1|A|C|1200

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14