IL_9T61_058

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_058 not in the Motif Atlas

Geometric match to IL_8OI5_069

Geometric discrepancy: 0.259

The information below is about IL_8OI5_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9T61|1|A|C|1256
9T61|1|A|C|1257
9T61|1|A|A|1258
9T61|1|A|A|1259
9T61|1|A|G|1260
*
9T61|1|A|U|1269
9T61|1|A|G|1270
9T61|1|A|G|1271
9T61|1|A|A|1272
9T61|1|A|G|1273

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19