IL_9T61_062

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_062 not in the Motif Atlas

Geometric match to IL_8B0X_177

Geometric discrepancy: 0.0464

The information below is about IL_8B0X_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9T61|1|A|G|1402
9T61|1|A|U|1403
9T61|1|A|C|1404
*
9T61|1|A|G|1491
9T61|1|A|U|1492
9T61|1|A|C|1493

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA