IL_9T61_065

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_065 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1379

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

9T61|1|A|G|1413
9T61|1|A|G|1414
9T61|1|A|A|1415
9T61|1|A|G|1416
*
9T61|1|A|U|1478
9T61|1|A|G|1479
9T61|1|A|A|1480
9T61|1|A|C|1481

Current chains

Chain A

16S ribosomal RNA

Nearby chains