IL_9T6M_024

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9T6M|1|A|A|532, 9T6M|1|A|U|534, 9T6M|1|A|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T6M|1|A|G|515
9T6M|1|A|PSU|516
9T6M|1|A|G|517
9T6M|1|A|C|518
9T6M|1|A|C|519
9T6M|1|A|A|520
9T6M|1|A|G|521
*
9T6M|1|A|C|528
9T6M|1|A|G|529
9T6M|1|A|G|530
9T6M|1|A|U|531
9T6M|1|A|A|532
9T6M|1|A|A|533
9T6M|1|A|U|534
9T6M|1|A|A|535
9T6M|1|A|C|536

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12

Chain X

mRNA

Chain Y

Transfer RNA; tRNA