IL_9T6M_081

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9T6M|1|a|G|801, 9T6M|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T6M_081 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1316

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9T6M|1|a|G|674
9T6M|1|a|A|675
9T6M|1|a|A|676
9T6M|1|a|A|677
9T6M|1|a|C|678
*
9T6M|1|a|G|799
9T6M|1|a|A|800
9T6M|1|a|G|801
9T6M|1|a|A|802
9T6M|1|a|U|803
9T6M|1|a|A|804
9T6M|1|a|G|805
9T6M|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15