IL_9T6M_133

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9T6M|1|a|A|1801, 9T6M|1|a|C|1816, 9T6M|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T6M_133 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0998

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9T6M|1|a|U|1798
9T6M|1|a|G|1799
9T6M|1|a|C|1800
9T6M|1|a|A|1801
9T6M|1|a|A|1802
9T6M|1|a|A|1803
9T6M|1|a|C|1804
*
9T6M|1|a|G|1813
9T6M|1|a|G|1814
9T6M|1|a|A|1815
9T6M|1|a|C|1816
9T6M|1|a|G|1817
9T6M|1|a|U|1818
9T6M|1|a|A|1819
9T6M|1|a|U|1820
9T6M|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2