IL_9T6M_151

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9T6M|1|a|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T6M_151 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.2564

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9T6M|1|a|C|2129
9T6M|1|a|U|2130
9T6M|1|a|U|2131
9T6M|1|a|U|2132
9T6M|1|a|G|2133
9T6M|1|a|A|2134
9T6M|1|a|A|2135
9T6M|1|a|G|2136
*
9T6M|1|a|U|2155
9T6M|1|a|G|2156
9T6M|1|a|G|2157
9T6M|1|a|A|2158
9T6M|1|a|G|2159

Current chains

Chain a

23S rRNA

Nearby chains