IL_9T7H_102

3D structure

PDB id

9T7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9T7H|1|1|G|2808, 9T7H|1|1|A|2809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T7H_102 not in the Motif Atlas

Homologous match to IL_4V9F_087

Geometric discrepancy: 0.1848

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_30722.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

20

Unit IDs

9T7H|1|1|C|2742
9T7H|1|1|U|2743
9T7H|1|1|C|2744
*
9T7H|1|1|G|2806
9T7H|1|1|U|2807
9T7H|1|1|G|2808
9T7H|1|1|A|2809
9T7H|1|1|G|2810

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BJ

Large ribosomal subunit protein uL14