IL_9TEL_002

3D structure

PDB id

9TEL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chicken LGP2 bound to 10-mer RNA mismatched duplex that mimics the influenza B virus vRNA promoter (panhandle) and to ADP-AlF4-Mg.

Experimental method

X-RAY DIFFRACTION

Resolution

1.436 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9TEL|1|Y|A|7
9TEL|1|Y|A|8
9TEL|1|Y|C|9
*
9TEL|1|X|G|2
9TEL|1|X|C|3
9TEL|1|X|U|4||A

Current chains

Chain Y

RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*A)-3')

Chain X

RNA (5'-R(*UP*GP*CP*UP*UP*CP*UP*GP*CP*U)-3')

Nearby chains

Chain A

RNA helicase