IL_9TEX_013

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9TEX|1|A|U|244, 9TEX|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEX_013 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1498

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9TEX|1|A|G|242
9TEX|1|A|A|243
9TEX|1|A|U|244
9TEX|1|A|U|245
9TEX|1|A|A|246
9TEX|1|A|G|247
*
9TEX|1|A|C|277
9TEX|1|A|G|278
9TEX|1|A|A|279
9TEX|1|A|C|280
9TEX|1|A|G|281
9TEX|1|A|A|282
9TEX|1|A|U|283
9TEX|1|A|C|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17