IL_9TEX_085

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9TEX|1|a|G|776, 9TEX|1|a|A|788, 9TEX|1|a|A|789, 9TEX|1|a|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEX_085 not in the Motif Atlas

Geometric match to IL_9E6Q_032

Geometric discrepancy: 0.0432

The information below is about IL_9E6Q_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

9TEX|1|a|G|775
9TEX|1|a|G|776
9TEX|1|a|G|777
*
9TEX|1|a|C|787
9TEX|1|a|A|788
9TEX|1|a|A|789
9TEX|1|a|U|790
9TEX|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain e

Large ribosomal subunit protein uL4

Chain r

Large ribosomal subunit protein uL22