IL_9TEY_057

3D structure

PDB id

9TEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the terminating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEY_057 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1592

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9TEY|1|A|G|1401
9TEY|1|A|4OC|1402
9TEY|1|A|C|1403
9TEY|1|A|C|1404
*
9TEY|1|A|G|1497
9TEY|1|A|UR3|1498
9TEY|1|A|A|1499
9TEY|1|A|A|1500
9TEY|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain V

Large subunit ribosomal RNA; LSU rRNA

Chain W

Peptide chain release factor RF1

Chain Y

5S ribosomal RNA; 5S rRNA

Chain Z

Transfer RNA; tRNA