IL_9TEY_152

3D structure

PDB id

9TEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the terminating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9TEY|1|V|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEY_152 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1725

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9TEY|1|V|A|2459
9TEY|1|V|U|2460
9TEY|1|V|A|2461
*
9TEY|1|V|U|2489
9TEY|1|V|G|2490
9TEY|1|V|U|2491
9TEY|1|V|U|2492
9TEY|1|V|U|2493

Current chains

Chain V

23S rRNA

Nearby chains

Chain W

Peptide chain release factor RF1

Chain l

Large ribosomal subunit protein uL16