IL_9TEZ_042

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9TEZ|1|V|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEZ_042 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1713

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9TEZ|1|V|C|1208
9TEZ|1|V|U|1209
9TEZ|1|V|G|1210
9TEZ|1|V|C|1211
9TEZ|1|V|G|1212
9TEZ|1|V|A|1213
9TEZ|1|V|A|1214
9TEZ|1|V|G|1215
*
9TEZ|1|V|U|1234
9TEZ|1|V|G|1235
9TEZ|1|V|G|1236
9TEZ|1|V|A|1237
9TEZ|1|V|G|1238

Current chains

Chain V

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20