IL_9TEZ_064

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9TEZ|1|V|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEZ_064 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0689

The information below is about IL_8B0X_128

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9TEZ|1|V|U|1712
9TEZ|1|V|A|1713
9TEZ|1|V|U|1714
9TEZ|1|V|G|1715
9TEZ|1|V|U|1716
9TEZ|1|V|A|1717
9TEZ|1|V|G|1718
*
9TEZ|1|V|U|1742
9TEZ|1|V|G|1743
9TEZ|1|V|A|1744
9TEZ|1|V|A|1745
9TEZ|1|V|A|1746

Current chains

Chain V

23S rRNA

Nearby chains